PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034773-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 913aa    MW: 102222 Da    PI: 6.3319
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034773-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-071552137
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtl 37
                      + +W t+E++ l  avk++G ++W++++ +++  ++++
  PSME_00034773-RA 15 KSKWGTWEELVLGSAVKKHGADNWDKVSLELQaRKLSP 52
                      679***************************99755555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-4966IPR009057Homeodomain-like
PROSITE profilePS500906.4231068IPR017877Myb-like domain
SMARTSM007176.8E-41470IPR001005SANT/Myb domain
PfamPF002497.2E-61549IPR001005SANT/Myb domain
CDDcd001671.21E-41767No hitNo description
SuperFamilySSF473703.14E-17439561IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.3E-14446579IPR001487Bromodomain
SMARTSM002975.0E-14448559IPR001487Bromodomain
CDDcd043694.96E-16458554No hitNo description
PfamPF004394.9E-10465539IPR001487Bromodomain
PROSITE profilePS5001410.953470540IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
METENNNNNN NNNTKSKWGT WEELVLGSAV KKHGADNWDK VSLELQARKL SPYVFSSEDC  60
KAKYHALQGR FKNSHGNSCS NSLPWLDELR KLRVAQLKRE LERYDGSIVS LESKLKKLKT  120
EREQSLLKEQ QKTTEKHTSE QEKERSPEEE GKDGFQMCPE TDPTAPKMED GKIESLDNPN  180
RPLENPDPGS GNPKEDLGSK EALVVHDEIR DENPHGEQDL PLESVQPPSA EEPVPQQPDG  240
KTLDKEPAKP ETLSGPASPL DSYYGSSETI AKEHPNRMGS EQEDGMGSEQ EDEEEEDDDN  300
DNNDNDRMGS EPDDDDDEND AREQVCAEST DVHSETVVDM KDSGFQECSA ESREIGEEEG  360
KGICEKRCDR DARLQPWDSN DVLSSAELST RRKDGRKSSS TSHDASETVR GHYKDYEDSV  420
GAWQHQATRS SGDSQVEGTD EMSPMSKRSR REAKVPGKLL PLLECLRAIS AHKFGSIFKH  480
RLESQDNLYY QSMIRRHVDL AMVRSRLEEG SYSGSVEFFR DLLLVFNNAL VYYPKYSPES  540
GAAYVLRELA TKEMTTIFQT EALLKQEGPS TRKREPRKLP EFSLSAKPNP TPMVSFRKRN  600
ASTSHGEYQV SGPKGAHSTL EQSSPCVIQV QQPQQAEKRK EDETKDDKVK GNKIGEHKVV  660
ESSASPSMTQ ILEKQREQKT DAAKLRTAAN SSAGNASGQS KLDKFAVESK ERIRDTQYHG  720
EPIMTSVNNN HQTKKTTINN KIELKKGPSS KHDLEKNSSD LLAPMKSSSG FFRAKKSSAS  780
TAEPIKSSSH IIETNKSSGN IAKPIKSSNT VEQERISSNA IRRGRELKNK EQQDNLSLKP  840
PLKQPLASTT TTTSTTHEQP LIKRGVGRPP KHAKQASQQH KSQQPLGQKQ QVPELKATES  900
ELLLPRPRKR SRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1116080.0BT111608.1 Picea glauca clone GQ03301_E02 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-24DNA-binding bromodomain-containing protein